Novel protein having b-glucosidase activity and uses thereof

ABSTRACT

By combination of hydrophobic chromatography and strongly basic anion-exchange chromatography, a novel, highly hydrophobic β-glucosidase was successfully identified from  Acremonium cellulolyticus . Further, a gene corresponding to the identified β-glucosidase was isolated. When multiple modifications were introduced into the base sequence of the gene, the gene was successfully expressed in  Trichoderma viride  at a high level, and the expression product successfully exhibited a high β-glucosidase activity.

CROSS REFERENCE TO RELATED APPLICATIONS

This application is a Divisional of U.S. application Ser. No. 13/391,598, filed Feb. 21, 2012 (now allowed); which is a National Stage of International Application No. PCT/JP2010/063844 filed Aug. 17, 2010; which claims priority based on Japanese Patent Application No. 2009-190840 filed Aug. 20, 2009; the contents of all of which are incorporated herein by reference in their entirety.

TECHNICAL FIELD

The present invention relates to a novel protein having a β-glucosidase activity and uses thereof.

Specifically, the present invention relates to a novel protein having a β-glucosidase activity derived from Acremonium cellulolyticus, an analog and a variant of the protein, polynucleotides encoding these proteins, and a production method for and uses of these proteins.

BACKGROUND ART

Cellulose is an essential constitutive component of cells of higher plants, and widely exists in nature. Cellulose is a polysaccharide polymer of glucose units polymerized through a β-1,4-glycosidic bond. In nature, cellulose exists in a crystalline or amorphous state. By bonding to other components such as lignin, hemicelluloses, and pectins in a complicated manner, cellulose constructs plant tissues.

Cellulase is a generic term of a group of enzymes that breaks down cellulose. Generally, cellulase produced by microorganisms includes various types of cellulase components. In accordance with the substrate specificity, the cellulase components are classified into three types: cellobiohydrolase, endoglucanase, and β-glucosidase. Aspergillus niger that is a cellulase-producing filamentous fungus is believed to produce 4 types of cellobiohydrolases at maximum, 15 types of endoglucanases, and 15 types of β-glucosidases. Presumably, multiple enzymes among these acting in various reaction modes compensate for each other to exhibit synergistic effects, thereby breaking down cellulose which is an essential component of plant cell walls. It is believed that β-glucosidase catalyzes a reaction to release glucose from cello-oligosaccharides, cellobiose or glycosides with aglycone linked thereto through β-D-glucopyranosyl linkage. β-glucosidase is an important enzyme in the final stage of cellulose saccharification and in releasing glucose from glycoside.

Ethanol conversion from biomass has advantages that: the raw material is more readily available, combustion of the raw material or burying in the ground can be avoided, and ethanol fuel is environmentally clean. Woods, agricultural residues, herbaceous crops and municipal solid wastes have drawn attention as biomass for ethanol production. These materials are mainly composed of cellulose, hemicellulose and lignin. Once cellulose is converted into glucose, the glucose is easily fermented into ethanol by yeasts. On the other hand, cellobiose is not easily fermented into ethanol by yeasts, and accordingly the remaining cellobiose causes ethanol yield reduction. What is more important is that cellobiose is a potent inhibitor of endoglucanases and cellobiohydrolases. For this reason, the accumulation of cellobiose during hydrolysis is not desirable for production of ethanol. Generally, cellulase-producing microorganisms can hardly produce β-glucosidases. This brings about a major problem that cellobiose produced by enzymatic hydrolysis is accumulated.

In order to promote conversion from cellobiose to glucoses, the yield of β-glucosidases is increased by over-expression of β-glucosidases in a host. Thus, it is effective means for promoting saccharification from biomass to glucose. Accordingly, isolation of a novel β-glucosidase gene which is introduced and expressed in cellulase-producing microorganisms has been desired.

Meanwhile, filamentous fungus Acremonium cellulolyticus has been reported to produce a cellulase having a strong saccharification power (Non Patent Literature 1) and to be highly useful for feed and silage usages (Patent Literatures 1 to 3). In addition, the cellulase component contained therein (Patent Literatures 4 to 10) has also been examined in detail. It has been revealed that various kinds of cellulase component are secreted as in other filamentous fungi. Particularly, as to the β-glucosidase activity of the cellulase therein, it has been reported, for example, that the activity is significantly higher than those of cellulases from Trichoderma reesei and the like (Patent Literature 11). Because of such characteristics, attention has been focused on Acremonium cellulolyticus as the target from which a β-glucosidase gene is isolated.

However, only a few genes have been isolated from Acremonium cellulolyticus so far (Patent Literatures 9, 10). Further, the isolated genes have not yet been successfully expressed in filamentous fungi other than Acremonium cellulolyticus.

CITATION LIST Patent Literatures

-   [PTL 1] Japanese Unexamined Patent Application Publication No. Hei     7-264994 -   [PTL 2] Japanese Patent No. 2531595 -   [PTL 3] Japanese Unexamined Patent Application Publication No. Hei     7-236431 -   [PTL 4] Japanese Unexamined Patent Application Publication No.     2001-17180 -   [PTL 5] International Publication No. WO97/33982 -   [PTL 6] International Publication No. WO99/011767 -   [PTL 7] Japanese Unexamined Patent Application Publication No.     2000/69978 -   [PTL 8] Japanese Unexamined Patent Application Publication No. Hei     10-066569 -   [PTL 9] Japanese Unexamined Patent Application Publication No.     2002/101876 -   [PTL 10] International Publication No. WO2002/026979 -   [PTL 11] Japanese Examined Patent Application Publication No. Sho     60-43954

Non Patent Literature

-   [NPL 1] “Agricultural and Biological Chemistry,” (Japan), 1987, Vol.     51, p. 65

SUMMARY OF INVENTION Technical Problem

The present invention has been made in view of such circumstances. An object of the present invention is to isolate a novel β-glucosidase gene from Acremonium cellulolyticus. Another object of the present invention is to increase the yield of β-glucosidase from a host in which the isolated β-glucosidase gene is expressed at a high level.

Solution to Problem

To achieve the above-described objects, the present inventors have earnestly studied methods of separating and purifying a β-glucosidase derived from Acremonium cellulolyticus. As a result, the inventors have finally successfully identified a novel β-glucosidase different from β-glucosidases that have been known so far from Acremonium cellulolyticus. Moreover, a gene encoding the identified β-glucosidase has also been successfully isolated. The β-glucosidase gene found out by the present inventors had not been isolated despite attempts over the years to isolate the gene from Acremonium cellulolyticus. The reason is presumably that since the hydrophobicity of a protein encoded by the gene is high, this makes the separation and purification thereof difficult.

Further, the present inventors have earnestly studied methods of expressing the isolated β-glucosidase gene derived from Acremonium cellulolyticus at a high level in a host, thereby causing the host to produce a β-glucosidase having an excellent activity. As a result, by introducing modification of multiple bases into the β-glucosidase gene, successfully, for the first time in the world, high-level expression of a β-glucosidase gene was achieved in filamentous fungi other than Acremonium cellulolyticus, and the expression product exhibited a high β-glucosidase activity. This makes it possible to express a β-glucosidase derived from Acremonium cellulolyticus at a high level in a host, and to increase an amount of β-glucosidase produced. The present inventors have found out that by using the β-glucosidase or a cellulase preparation obtained from the transformant thus prepared, saccharification from biomass to glucose and various treatments and modifications on a cellulose-based substrate can be efficiently carried out. This discovery has led to the completion of the present invention.

Specifically, the present invention relates to a novel protein having a β-glucosidase activity derived from Acremonium cellulolyticus, an analog and a variant of the protein, polynucleotides encoding these proteins, and a production method for and uses of these proteins. More specifically, the present invention provides the followings.

(1) A polynucleotide of any one of the following (i) to (vi), which encodes a protein having a β-glucosidase activity:

(i) a polynucleotide encoding a protein comprising an amino acid sequence of SEQ ID NO: 3;

(ii) a polynucleotide comprising a coding region of a base sequence of any one of SEQ ID NOs: 1 and 2;

(iii) a polynucleotide encoding a protein comprising an amino acid sequence of SEQ ID NO: 3 in which one or more amino acids are substituted, deleted, inserted and/or added;

(iv) a polynucleotide encoding a protein comprising an amino acid sequence having an identity of 90% or more with the amino acid sequence of SEQ ID NO: 3;

(v) a polynucleotide hybridizing under stringent conditions with a polynucleotide comprising the base sequence of any one of SEQ ID NOs: 1 and 2; and

(vi) a polynucleotide of any one of (i) to (v) from which a base sequence encoding a signal sequence is removed.

(2) The polynucleotide according to (1), which is derived from a filamentous fungus. (3) The polynucleotide according to (2), wherein the filamentous fungus is Acremonium cellulolyticus. (4) A polynucleotide of any one of the following (i) and (ii), which encodes a protein having a β-glucosidase activity:

(i) a polynucleotide encoding a protein comprising an amino acid sequence of SEQ ID NO: 3; and

(ii) a polynucleotide comprising a coding region of a base sequence of SEQ ID NO: 4.

(5) A polynucleotide comprising a base sequence of SEQ ID NO: 4 in which one or more bases are substituted, deleted, inserted and/or added, the polynucleotide encoding a protein having a β-glucosidase activity and being expressible in Trichoderma viride. (6) The polynucleotide according to (5), being capable of improving a β-glucosidase activity when expressed in a Trichoderma viride transformant 5 times or more in comparison with a β-glucosidase activity in Trichoderma viride parental strain. (7) The polynucleotide according to any one of (4) to (6), from which a base sequence encoding a signal sequence is removed. (8) An expression vector comprising the polynucleotide according to any one of (1) to (7). (9) A host cell transformed with the expression vector according to (8). (10) A protein encoded by the polynucleotide according to any one of (1) to (7). (11) The protein according to (10), which is a recombinant protein. (12) A method for producing the protein according to (11), the method comprising the steps of:

culturing the host cell according to (9); and

harvesting a protein expressed from the host cell and/or a culture thereof.

(13) A cellulase preparation comprising the protein according to (11). (14) A method for degrading or converting a cellulose material, the method comprising the steps of:

treating the cellulose material with any one of the protein according to (10) and the cellulase preparation according to (13).

(15) A method for producing a degraded or converted cellulose material, the method comprising the steps of:

treating a cellulose material with any one of the protein according to (10) and the cellulase preparation according to (13); and

collecting a degraded cellulose material.

(16) The method according to (15), wherein the degraded cellulose material is a sugar. (17) A detergent composition comprising any one of the protein according to (10) and the cellulase preparation according to (13). (18) A method for treating a cellulose-containing fiber, the method comprising the steps of:

bringing into contact any one of the protein according to (10), the cellulase preparation according to (13), and detergent composition the according to (17) with the cellulose-containing fiber.

(19) A method for deinking waste paper, the method characterized in that any one of the protein according to (10) and the cellulase preparation according to (13) is used in a deinking step of treating the waste paper with a deinking agent. (20) A method for producing paper pulp having an improved drainage, the method comprising the steps of:

treating paper pulp with any one of the protein according to (10) and the cellulase preparation according to (13).

(21) A method for producing an animal feed having an improved digestibility, the method comprising the step of:

treating an animal feed with any one of the protein according to (10) and the cellulase preparation according to (13).

(22) A filamentous fungus expressing a reduced amount of a protein encoded by the polynucleotide according to (2).

Advantageous Effects of Invention

The present invention provides a novel β-glucosidase gene derived from Acremonium cellulolyticus, and an analog and a variant of the gene for efficiently expressing a β-glucosidase in a host. Further, the present invention provides a host which expresses the β-glucosidase at a high level, and which shows an excellent β-glucosidase activity. This makes it possible to obtain a β-glucosidase derived from Acremonium cellulolyticus as a purified protein or a cellulase preparation in high yield.

BRIEF DESCRIPTION OF DRAWING

FIG. 1 is a scheme showing a restriction enzyme map of a plasmid pBGLB.

DESCRIPTION OF EMBODIMENTS Protein Having β-Glucosidase Activity and Polynucleotide Encoding the Protein

The present invention provides a novel protein having a β-glucosidase activity and a polynucleotide encoding the protein. In the present invention, the “β-glucosidase” means an enzyme showing a β-glucosidase activity, that is, β-D-Glucoside glucohydrolase EC3.2.1.21. The “β-glucosidase activity” means an activity of hydrolyzing cello-oligosaccharides, cellobiose, or glycosides with aglycone linked thereto through β-D-glucopyranosyl linkage by an exo-mechanism to produce glucose.

The “polynucleotide” encoding the protein having a β-glucosidase activity of the present invention includes, for example, a DNA, a RNA, modified products or chimeras thereof, and is preferably a DNA. The DNA includes a cDNA, a genomic DNA, and a chemically synthesized DNA. The base sequence of a cDNA which is isolated by the present inventors, and which encodes the novel β-glucosidase (hereinafter, referred to as “acBGLB”) derived from Acremonium cellulolyticus, is shown in SEQ ID NO: 1. The base sequence of the genomic DNA is shown in SEQ ID NO: 2. Moreover, the amino acid sequence of the acBGLB encoded by these DNAs is shown in SEQ ID NO: 3.

A preferable embodiment of the polynucleotide of the present invention is a polynucleotide encoding the acBGLB comprising the amino acid sequence of SEQ ID NO: 3. An example thereof includes a polynucleotide comprising a coding region of the base sequence of any one of SEQ ID NOs: 1 and 2.

Moreover, the present invention comprises a polynucleotide encoding a protein functionally equivalent to the acBGLB. Examples of such a polynucleotide include mutants, derivatives, alleles, variants and homologs of the acBGLB. Herein, the phrase “functionally equivalent” means that the target protein has a β-glucosidase activity. Preferably, when compared, the target protein has 70% or more, preferably 80% or more, more preferably 90% or more, and most preferably 95% or more of the β-glucosidase activity of the acBGLB. The β-glucosidase activity of the target protein and the acBGLB can be evaluated as an activity of producing 1 μmol of p-nitrophenol from p-nitrophenyl-β-glucoside in 1 minute when measured by a method described in the literature (Methods in ENZYMOLOGY, vol. 160, Biomass Part A Cellulose and Hemicellulose, Willis A. Wood ed. p 109-110).

One embodiment of the polynucleotide encoding a protein functionally equivalent to the acBGLB is a polynucleotide encoding a protein having a β-glucosidase activity, the protein comprising an amino acid sequence of SEQ ID NO: 3 in which one or more amino acids are substituted, deleted, and/or added.

The number of amino acid residues modified is preferably 1 to 40, more preferably 1 to 20, further preferably 1 to 8, and most preferably 1 to 4. The modification of amino acids is preferably conservative substitution. The “conservative substitution” means that at least one amino acid residue is substituted with another chemically similar amino acid residue in such a manner as not to substantially change the activity of the polypeptide. Examples thereof include a case where a certain hydrophobic amino acid residue is substituted with another hydrophobic amino acid residue, a case where a certain polar amino acid residue is substituted with another polar amino acid residue having the same charge, and other cases. Functionally similar amino acids which can be subjected to such substitution are known to those skilled in the art for each amino acid. Specific examples of non-polar (hydrophobic) amino acids include alanine, valine, isoleucine, leucine, proline, tryptophan, phenylalanine, methionine, and the like. Specific examples of polar (neutral) amino acids include glycine, serine, threonine, tyrosine, glutamine, asparagine, cysteine, and the like. Specific examples of positively-charged (basic) amino acids include arginine, histidine, lysine, and the like. Further, specific examples of negatively-charged (acidic) amino acids include aspartic acid, glutamic acid, and the like.

The polynucleotide encoding the protein having a β-glucosidase activity of the present invention is preferably a polynucleotide encoding a protein comprising an amino acid sequence of SEQ ID NO: 3 (for example, a polynucleotide comprising a coding region of a base sequence of SEQ ID NO: 4), particularly when expressed in Trichoderma viride. In the base sequence of SEQ ID NO: 4, 13.2% or more of the bases are modified in comparison with the base sequence (SEQ ID NO: 1) of the polynucleotide encoding the acBGLB. In determining a codon corresponding to each amino acid, the frequency distribution of codons used in a host is taken into consideration. This enables the expression in Trichoderma viride, and the expression product successfully exhibits a high β-glucosidase activity. Once such a preferable sequence is obtained, those skilled in the art could, on the basis of this sequence, further modify the base sequence to obtain a polynucleotide expressible in Trichoderma in the same manner as the polynucleotide comprising the coding region of the base sequence of SEQ ID NO: 4. Thus, the present invention provides a polynucleotide comprising the base sequence of SEQ ID NO: 4 in which one or more bases (preferably 30 bases or less, more preferably 20 bases or less, further preferably 10 bases or less, and still further preferably 5 bases or less) are substituted, deleted, inserted and/or added, the polynucleotide encoding a protein having a β-glucosidase activity and being expressible in Trichoderma viride. A preferable embodiment of such a polynucleotide is a polynucleotide capable of improving a β-glucosidase activity when expressed in a Trichoderma viride transformant 5 times or more (preferably, 7 times or more) in comparison with a β-glucosidase activity in a Trichoderma viride parental strain (original Trichoderma viride strain not deficient in a gene for uracil biosynthesis) (see Example 5).

In the present invention, another embodiment of the polynucleotide encoding a protein functionally equivalent to the acBGLB is a polynucleotide encoding a protein having a β-glucosidase activity, the protein comprising an amino acid sequence having an identity of 90% or more with the amino acid sequence of SEQ ID NO: 3. Herein, the “identity” is a numerical value calculated by using the default (initial setting) parameters in FASTA3 [Science, 227, 1435-1441(1985), Proc. Natl. Acad. Sci. USA, 85, 2444-2448 (1988), http://www.ddbj.nig.ac.jp/E-mail/homology-j.html] that is a homology search program known to those skilled in the art. The identity can be preferably an identity of 95% or more, further preferably an identity of 98% or more, and particularly preferably an identity of 99% or more.

In the present invention, another embodiment of the polynucleotide encoding a protein functionally equivalent to the acBGLB is a polynucleotide encoding a protein having a β-glucosidase activity, the polynucleotide hybridizing under stringent conditions with a polynucleotide comprising the base sequence of any one of SEQ ID NOs: 1 and 2. Herein, the “stringent conditions” mean that under which a membrane washing procedure after the hybridization is carried out at high temperature in a solution having a low salt concentration, and means washing conditions, for example, at 2×SSC concentration (1×SSC: 15 mmol/L of trisodium citrate and 150 mmol/L of sodium chloride) and in a 0.5% SDS solution at 60° C. for 20 minutes.

Further, the present invention provides a polynucleotide encoding the acBGLB or a protein functionally equivalent thereto, from which abase sequence encoding a signal sequence is removed. The signal sequence of the acBGLB is an amino acid sequence from positions −18 to −1 in the amino acid sequence of SEQ ID NO: 3.

Any polypeptide sequence may be added to the N-terminus and/or the C-terminus of each amino acid sequence corresponding to a mature protein portion of the protein of the present invention in such a manner as not to influence the β-glucosidase activity. Examples of such a polypeptide sequence include a signal sequence, a detection marker (for example, a FLAG tag), and a purification polypeptide [for example, glutathione S-transferase (GST)].

The polynucleotide encoding the protein having a β-glucosidase activity of the present invention can be prepared by utilizing conventional means for those skilled in the art. In preparing a genomic DNA encoding the protein having a β-glucosidase activity of the present invention, for example, first, a genomic DNA is extracted from a target microorganism such as Acremonium cellulolyticus by a generally-used method. The genomic DNA is digested with an appropriate restriction enzyme and then ligated to an appropriate vector. Thereby, a genomic DNA library of Acremonium cellulolyticus is prepared. As the vector, various vectors can be used such as, for example, a plasmid vector, a phage vector, a cosmid vector, and a BAC vector. Next, an appropriate probe is prepared based on the base sequence (for example, SEQ ID NO: 2) of the polynucleotide encoding the protein having a β-glucosidase activity of the present invention, and a desired genomic DNA can be isolated from the genomic DNA library through hybridization. Alternatively, a primer is prepared based on the base sequence (for example, SEQ ID NO: 2) of the polynucleotide encoding the protein having a β-glucosidase activity of the present invention, and PCR is performed using the genomic DNA of Acremonium cellulolyticus as a template. A DNA fragment thus amplified is ligated to an appropriate vector. Accordingly, a desired genomic DNA can be isolated. Meanwhile, in preparing a cDNA encoding the protein having a β-glucosidase activity of the present invention, for example, first, a cDNA is synthesized based on an mRNA extracted from a target microorganism such as Acremonium cellulolyticus. The cDNA is digested with an appropriate restriction enzyme and then ligated to an appropriate vector. Thereby, a cDNA library of Acremonium cellulolyticus is prepared. Next, an appropriate probe is prepared based on the base sequence (for example, SEQ ID NO: 1) of the polynucleotide encoding the protein having a β-glucosidase activity of the present invention, and a desired cDNA can be isolated from the cDNA library through hybridization. Alternatively, a primer is prepared based on the base sequence (for example, SEQ ID NO: 1) of the polynucleotide encoding the protein having a β-glucosidase activity of the present invention, and PCR is performed using the cDNA of Acremonium cellulolyticus as a template. A DNA fragment thus amplified is ligated to an appropriate vector. Accordingly, a desired cDNA can be isolated. Furthermore, the polynucleotide encoding the protein having a β-glucosidase activity of the present invention can be obtained artificially by chemical synthesis.

The present invention provides an expression vector comprising: the polynucleotide encoding the protein having a β-glucosidase activity of the present invention, the polynucleotide being replicable in a host microorganism; and the protein encoded from the polynucleotide sequence in an expressible state. The expression vector of the present invention can be constructed based on a self-replicating vector, i.e., for example, a plasmid which exists as an extrachromosomal element, and which replicates independently of the replication of the chromosome. Alternatively, the expression vector of the present invention may be replicated together with the chromosome of the host microorganism, after introduced into the host microorganism and incorporated into the genome thereof. As a procedure and a method for constructing the expression vector of the present invention, any procedure and any method commonly used in the field of genetic engineering can be used.

To express the protein having a β-glucosidase activity after the expression vector according to the present invention is actually introduced in a host microorganism, the expression vector according to the present invention desirably comprises, in addition to the polynucleotide encoding the protein having a β-glucosidase activity of the present invention, a polynucleotide sequence for regulating the expression, a genetic marker for selecting a microorganism, and the like. Examples of the polynucleotide sequence for regulating the expression include polynucleotide sequences encoding a promoter, terminator, and signal peptide. The promoter is not particularly limited, as long as the transcriptional activity is exhibited in the host microorganism. The promoter may be derived from a microorganism either homologous or heterologous to the host microorganism. Moreover, the signal peptide is not particularly limited, as long as the signal peptide contributes to secretion of the protein in the host microorganism. The signal peptide may be derived from a microorganism either homologous or heterologous to the host microorganism. Further, the genetic marker can be selected as appropriate according to the method of selecting the transformant. For example, a gene encoding drug resistance or a gene complementing the auxotrophy can be used.

Further, the present invention provides a microorganism trans formed with the expression vector. The host microorganism used in the present invention is not particularly limited. Examples thereof include filamentous fungi, yeasts, Escherichia coli, actinomycetes, and the like. Examples of the yeast cells include those belonging to the genera Saccharomyces, Hansenula, and Pichia. A preferable example of the yeast cell is Saccharomyces cerevisiae. Moreover, examples of the filamentous fungi include those belonging to the genera Humicola, Aspergillus, Trichoderma, Fusarium, and Acremonium. Preferably examples of the filamentous fungi include Humicola insolens, Aspergillus niger, Aspergillus oryzae, Trichoderma viride, Fusarium oxysporum, and Acremonium cellulolyticus. The transformation of these microorganisms with the expression vector of the present invention can be carried out according to any method commonly used in this field.

The protein having a β-glucosidase activity of the present invention (or a cellulase preparation of the present invention to be described later) can be collected from a culture (for example, cultured cell, culture supernatant) obtained by culturing the thus-prepared transformant in an appropriate medium. The culturing of the transformant and conditions therefor may be substantially the same as those for a microorganism to be used. Moreover, as the method of collecting the target protein after the transformant is cultured, any method commonly used in this field can be used. For example, after the culturing of the transformant is finished, a supernatant fluid obtained by removal from the culture by centrifugation or the like can be used as a crude enzyme. Further, this supernatant fluid is concentrated by an ultrafiltration method or the like, and an antiseptic and the like are added thereto. The resultant can be used as a concentrated enzyme. Furthermore, after the concentrating, a powdery enzyme can be prepared by a spray-dry method or the like. The protein having a β-glucosidase activity of the present invention (or the cellulase preparation of the present invention) can be obtained, as necessary, by partially purifying or highly purifying the concentrated enzyme or the powdery enzyme. As the purification method, conventional methods, for example, a salting-out method with ammonium sulfate or the like, an organic solvent precipitation method with alcohol or the like, a membrane separation method, and a chromatographic separation method using an ion exchanger, a hydrophobic chromatography carrier, a gel filtration carrier, or the like, can be used alone or in combination as appropriate. The present invention provides such a method for producing the protein having a β-glucosidase activity of the present invention (or the cellulase preparation of the present invention).

Cellulase Preparation

The present invention provides a cellulase preparation comprising the above-described protein having a β-glucosidase activity of the present invention. The cellulase preparation of the present invention may comprise a different protein from the protein having a β-glucosidase activity of the present invention. As the different protein, the cellulase preparation of the present invention may comprise, for example, a β-glucosidase other than the protein having a β-glucosidase activity of the present invention, hemicellulase, endoglucanase, cellobiohydrolase, aminopeptidase, amylase, carbohydrase, carboxypeptidase, catalase, chitinase, cutinase, cyclodextrin glycosyltransferase, deoxyribonuclease, esterase, α-galactosidase, β-galactosidase, glucoamylase, α-glucosidase, haloperoxidase, invertase, laccase, lipase, mannosidase, oxidase, pectinase, peptide glutaminase, peroxidase, phytase, polyphenol oxidase, protease, ribonuclease, transglutaminase, orxylanase. The protein different from the protein having a β-glucosidase activity of the present invention comprised in the cellulase preparation of the present invention may be derived from the transformant which expresses the protein having a β-glucosidase activity of the present invention or may be one independently added.

The cellulase preparation of the present invention may be produced while being mixed with generally-contained carrier or medium, for example, an excipient (for example, lactose, sodium chloride, sorbitol, or the like), a surfactant, an antiseptic, or the like. Moreover, the cellulase preparation of the present invention can be produced in an appropriate form, for example, powder or liquid.

Uses of Protein Having β-Glucosidase Activity or Cellulase Preparation

The present invention provides a method for degrading or converting a cellulose material, the method comprising: treating the cellulose material with any one of the protein having a β-glucosidase activity of the present invention and the cellulase preparation of the present invention. Moreover, the present invention provides a method for producing a degraded or converted cellulose material, the method comprising: treating a cellulose material; and then collecting a degraded cellulose material. The cellulose material is typically a biomass. Examples thereof include, but are not limited to, rice straw, bagasse, corn stover, pomaces of fruits such as coconut, waste wood, and materials obtained by subjecting these to an appropriate pre-treatment. The protein having a β-glucosidase activity or the cellulase preparation used for treating the cellulose material may be in the form of a crude fermentation broth from which cells are removed or not removed, or may be in the form of semi-purified or purified preparation. In the fermentation process using the biomass, the transformant of the present invention can be used as a source of producing the protein having a β-glucosidase activity of the present invention. To the transformant, various cellulase genes or a gene encoding another enzyme effective in processing the biomass may be introduced. The methods of the present invention can be utilized to produce a sugar (for example, monosaccharides, disaccharides, polysaccharides) as chemical or fermentation feedstocks from the biomass, for example. The sugar thus obtained serves as a raw material for producing, for example, ethanol, plastics, other products or intermediates.

Further, the present invention provides a detergent composition comprising any one of the protein having a β-glucosidase activity of the present invention and the cellulase preparation of the present invention. The detergent composition of the present invention may also comprise a surfactant (anionic, nonionic, cationic, amphoteric or zwitterionic surfactant, or may be a mixture of these). Moreover, the detergent composition may also comprise other detergent components known in this field, for example, a builder, a bleach, a bleach activator, a corrosion inhibitor, a sequestering agent, a soil release polymer, a flavor, other enzymes (protease, lipase, amylase, and the like), an enzyme stabilizer, a formulation aid, an optical brighter, and/or a foaming agent, and the like.

Furthermore, the present invention provides a method for treating a cellulose-containing fiber, the method comprising the steps of bringing any one of the protein having a β-glucosidase activity of the present invention, the cellulase preparation of the present invention, and the detergent composition into contact with the cellulose-containing fiber. Examples of characteristics of the cellulose-containing fiber to be improved by the treatment method of the present invention include: (1) touch feel and appearance of the fiber improved by the reduced weight, (2) local variations in color provided to the colored cellulose-containing fiber, that is, stonewashed appearance and texture provided to the colored cellulose-containing fiber, typically jeans, (3) clearness of the color of the colored cellulose-containing fiber, (4) softness (slowed timing when the material starts to stiffen, reduction in stiffness), and (5) removal of fuzz (slowed timing when fuzz starts to form, reduction in fuzz).

Furthermore, the present invention provides a method for deinking waste paper, the method characterized in that any one of the protein having a β-glucosidase activity of the present invention and the cellulase preparation of the present invention is used in a deinking step of treating the waste paper with a deinking agent.

Furthermore, the present invention provides a method for producing paper pulp having an improved drainage, the method comprising the step of: treating paper pulp with any one of the protein having a β-glucosidase activity of the present invention and the cellulase preparation of the present invention. According to the present invention, the drainage of the paper pulp can be improved without a significant reduction in strength. Examples of the paper pulp that is the treatment target include, but are not limited to, waste paper pulp, recycled paperboard pulp, Kraft pulp, sulfite pulp, thermo-mechanically treated and other high yield pulps.

Furthermore, the present invention provides a method for producing an animal feed having an improved digestibility, the method comprising the step of: treating an animal feed with any one of the protein having a β-glucosidase activity of the present invention and the cellulase preparation of the present invention. According to the method of the present invention, the digestibility of glucan in the feed in an animal body can be improved, for example.

Filamentous Fungus Expressing Reduced Amount of Protein Having β-Glucosidase Activity

The present invention provides a filamentous fungus expressing a reduced amount of the protein having a β-glucosidase activity of the present invention. The filamentous fungus is preferably a filamentous fungus belonging to the genus Acremonium, and most preferably Acremonium cellulolyticus. The expression of the protein having a β-glucosidase activity of the present invention (endogenous protein) in the filamentous fungus can be reduced by utilizing general techniques such as, for example, RNA interference method, antisense RNA•DNA method, and homologous recombination. Methods of preparing polynucleotide molecules (for example, a siRNA, an antisense RNA, an antisense DNA, a polynucleotide comprising a sequence homologous to a target DNA for the recombination, and the like) used in these techniques, preparing vectors comprising these polynucleotides, and introducing the vectors into hosts are known to those skilled in the art. When cellulose widely distributed among plants and so forth is degraded by using the filamentous fungus thus produced, glucose which is a final degradation product in the degradation process is not produced, but cellobiose in which two glucose molecules are linked by a β-1,4 bond is selectively produced. Cellobiose has a sweet taste but is not degraded in human bodies. Accordingly, cellobiose is useful as a sweetener in health food and food for diabetic patients, a cosmetic raw material, or a drug raw material. By utilizing the filamentous fungus of the present invention, the raw materials of these products can be provided at reduced cost.

EXAMPLES

The present invention will be more specifically described by way of Examples. However, the present invention is not to be limited to Examples below but is still within the gist of the present invention.

Example 1 Purification of β-Glucosidase of Acremonium cellulolyticus

A spray-dried powdery enzyme of cellulase was prepared from Acremonium cellulolyticus, and dissolved in a Tris-HCl buffer (0.05 M, pH 7.0) containing 0.5 M (NH₄)₂SO₄. Impurities were removed therefrom by high-performance cooling centrifugation. A supernatant thus obtained was purified as a starting material for the enzyme purification according to a method shown below.

(a) Hydrophobic Chromatography (Part 1)

In a Tris-HCl buffer (0.05 M, pH 7.0) containing 0.5 M (NH₄)₂SO₄, a protein contained in the supernatant was adsorbed to HiTrap Butyl FF (manufactured by GE Healthcare). Then, in a Tris-HCl buffer (0.05 M, pH 7.0) containing 0.5 M to 0 M of (NH₄)₂SO₄, the adsorbed protein was subjected to linear gradient elution to fractionate a fraction indicating a β-glucosidase activity.

(b) Hydrophobic Chromatography (Part 2)

A protein in the fraction obtained in (a) above was again adsorbed to HiTrap Butyl FF (manufactured by GE Healthcare). Then, the adsorbed protein was subjected to linear gradient elution by the same method as in (a) to fractionate a fraction indicating a β-glucosidase activity.

(c) Strongly Basic Anion-Exchange Chromatography

In a Tris-HCl buffer (0.05 M, pH 7.0), a protein in the fraction obtained in (b) above was adsorbed to MonoQ (manufactured by GE Healthcare). The adsorbed protein was subjected to linear gradient elution in a Tris-HCl buffer (0.05 M, pH 7.0) containing 0 M to 1 M of NaCl to fractionate a fraction indicating a β-glucosidase activity.

Example 2 Determining Partial Amino Acid Sequences of Purified β-Glucosidase

The fraction having a β-glucosidase activity fractionated by the strongly basic anion-exchange chromatography in Example 1 was separated by electrophoresis using 12% Gel SDS-PAGE mini (manufactured by TEFCO), and β-glucosidase B (acBGLB) of Acremonium cellulolyticus was identified. A band of the acBGLB was cut out, and then reductively carboxymethylated, followed by treatment with lysyl endopeptidase. This degraded product was separated by electrophoresis using 12% Gel SDS-PAGE mini (manufactured by TEFCO), and blotted on a PVDF membrane (manufactured by Millipore Corporation). A band of the peptide fragment thus obtained was cut out. The N-terminal amino acid sequence of the peptide fragment was determined using a protein sequencer Model 492 (manufactured by Applied Biosystems Inc.). Partial amino acid sequences (“BGLB-LE-1” and “BGLB-LE-2”) of the acBGLB thus determined were shown in SEQ ID NOs: 6 and 7, respectively.

Example 3 Cloning of acBGLB Gene (1) Isolation of Genomic DNA

An Acremonium cellulolyticus ACCP-5-1 strain was cultured in an (s) medium (2% broth, 0.5% yeast extract and 2% glucose) at 32° C. for 2 days, and the fungal cells were collected by centrifugation. A genomic DNA thereof was isolated from the obtained fungal cells according to the method by Horiuchi et al. (H. Horiuchi et. al., J. Bacteriol., 170, 272-278, (1988)).

(2) Acquisition of acBGLB Gene Fragment

Based on the partial amino acid sequences of the acBGLB, the following primers were prepared.

BGLB-F: (SEQ ID NO: 8) CCNTTYGTNGGNAAYACNGCNGCNCC BGLB-R: (SEQ ID NO: 9) CATDATRTANCCNGGRAANCC

Using BGLB-F and BGLB-R as the primers and the genomic DNA as a template, PCR was performed. The PCR was performed using LA taq polymerase (manufactured by Takara Bio Inc.). The PCR was performed in 35 cycles each of “94° C. for 30 seconds, 53° C. for 30 seconds, and 72° C. for 2 minutes.” The DNA fragment of 650 bp thus amplified was inserted into a pCR2.1-TOPO plasmid vector using TOPO TA cloning kit (manufactured by Invitrogen Corporation) in accordance with the protocol attached thereto. Thereby, a plasmid “TOPO-pBGLB-partial” was obtained.

The sequence of the inserted DNA fragment cloned in the plasmid “TOPO-pBGLB-partial” was determined using BigDye Terminator v3.1 Cycle Sequencing Kit (manufactured by Applied Biosystems Inc.) and ABI PRISM Genetic Analyzer (manufactured by Applied Biosystems Inc.) in accordance with the protocols attached thereto. The base sequence thus obtained was translated into the amino acid sequence. Homology search was conducted on the amino acid sequence. As a result, the amino acid sequence showed a homology of 72% with the β-glucosidase (XP_(—)001216552) derived from Aspergillus terreus and a homology of 88% with the β-glucosidase (XP_(—)002149046.1) derived from Penicillium marneffei. Thus, the DNA fragment was determined to be a part of the β-glucosidase (Glycoside Hydrolase family 3) gene.

(3) Acquisition of Full-Length acBGLB Gene by Inverse PCR Method

The inverse PCR method was performed according to the method by Triglia et al. (T. Triglia et. al., Nucleic Acids Research, 16, 8186, (1988)). The Acremonium cellulolyticus genomic DNA was digested with ScaI overnight, and a circular DNA was prepared from the digested fragment using Mighty Mix (manufactured by Takara Bio Inc.). PCR was performed using the circular DNA as a template and the following primers prepared based on the base sequence information on the acBGLB gene fragment. A 5′ upstream region and a 3′ downstream region of the acBGLB gene were obtained.

BGLB-inv-F: (SEQ ID NO: 10) TAGGCGTTCGTTATGCGAAC BGLB-inv-R: (SEQ ID NO: 11) AAACGAGATTCCAGATGGCG

The 5′ upstream region and the 3′ downstream region were analyzed by the method described in Example 3-(2). The full-length base sequence of the BGLB gene was determined.

Based on the base sequence obtained by the inverse PCR method, the following primers were prepared. PCR was performed using the genomic DNA as a template, to amplify the BGLB gene.

pBGLB-F: (SEQ ID NO: 12) CTGGACCTATATTCCCCGAT pBGLB-R: (SEQ ID NO: 13) TGGTTTGTCCATACTGCGTC

The DNA thus amplified was inserted into a pCR2.1-TOPO plasmid vector with TOPO TA cloning kit (manufactured by Invitrogen Corporation) to obtain a plasmid “pBGLB.” An Escherichia coli TOP10 strain (manufactured by Invitrogen Corporation) was transformed with the obtained plasmid “pBGLB.” Thereby, “Escherichia coli TOP10 strain/pBGLB” was obtained.

(4) Preparation of acBGLB cDNA and Intron Analysis of acBGLB Genomic DNA

An Acremonium cellulolyticus ACCP-5-1 strain was cultured in a cellulase induction medium at 32° C. for 2 days, and the fungal cells were collected by centrifugation. After frozen with liquid nitrogen, the resultant fungal cells were ground using a mortor and a pestle. The total RNA was isolated from the ground fungal cells with ISOGEN (Nippon Gene Co., Ltd.) in accordance with the protocol attached thereto. Further, a mRNA was purified from the total RNA with mRNA Purification Kit (Pharmacia Corporation) in accordance with the protocol attached thereto.

A cDNA was synthesized from the mRNA thus obtained with TimeSaver cDNA Synthesis Kit (Pharmacia Corporation) in accordance with the protocol attached thereto. The following primers containing the start codon and the stop codon were prepared from the acBGLB gene sequence, and PCR was performed using the cDNA as a template.

BGLB-N: (SEQ ID NO: 14) ATGTATTCCGCATTTCTTTTGCTGC BGLB-C: (SEQ ID NO: 15) CTATTGTAGGCATTGAGAATACCAT

The base sequence (SEQ ID NO: 1) of the cDNA thus amplified was analyzed by the method described in Example 3-(2), and compared with the base sequence of the pBGLB genomic DNA. Thus, the positions of introns in the genomic DNA were determined.

(5) Estimation of Amino Acid Sequence of acBGLB

The exons and introns of the acBGLB genomic DNA isolated by the above-described method were composed of 2630 bp shown from positions 218 to 2847 of the base sequence of SEQ ID NO: 2. Moreover, the acBGLB genomic DNA contained three introns shown from the 734th to 792nd, 1665th to 1717th, and 2523rd to 2601st of the base sequence of SEQ ID NO: 2. The amino acid sequence of the acBGLB predicted from an open reading frame (ORF) was as shown in SEQ ID NO: 3. A part of the amino acid sequence predicted from the ORF corresponded to the internal sequence of the acBGLB determined in Example 2. This fact revealed that the isolated genomic DNA encoded the acBGLB. Note that, using signal sequence prediction software SignalP 3.0, the amino acid residues from −18 to −1 of the acBGLB were estimated to be a signal sequence.

Example 4 Expression of acBGLB Gene in Trichoderma viride

(1) Modification of acBGLB Gene Codon for Suitable Expression in Trichoderma viride

To express the acBGLB gene at a high level as an active protein in Trichoderma viride, the acBGLB gene was modified. As a result of trials and errors, a DNA comprising the base sequence of SEQ ID NO: 4 which was modified from the acBGLB gene by 13.2% or more of the bases was found out. In designing this modified acBGLB gene, 16 kinds of amino acids among 20 kinds of amino acids in the encoding base sequence were modified; in addition, the frequency distribution of codons used in Trichoderma viride was taken into consideration. This modified acBGLB gene was artificially synthesized by Gene Design Inc. In the artificial synthesis, the design was made such that XbaI and SnaBI were contained in a sequence upstream of the start codon, and that SalI and XbaI were contained downstream of the stop codon. Thus, a plasmid “pBGLBkai” was obtained in which the codon-modified acBGLB gene was inserted in XbaI of pUC19.

(2) Construction of Codon-Modified BGLB-Expression Plasmid BGLBkai-pCB1

The plasmid “pBGLBkai” was cleaved with SnaBI and SalI, and approximately 2.7 kbp of a gene fragment “BGLBkai-N” was obtained. Meanwhile, to remove a hygromycin B resistance cassette from pCB1-Eg3X (International Publication No. WO98/11239), the pCB1-Eg3X was cleaved with a restriction enzyme XbaI, and then circularized again using TaKaRa DNA Ligation Kit Mighty Mix (manufactured by TAKARA SHUZO CO., LTD.). Thus, a plasmid “pCB1-Eg3X-hphless” was obtained. The “pCB1-Eg3X-hphless” was cleaved with StuI and XhoI, and approximately 7 kbp of a fragment was collected. To this, approximately 2.7 kbp of the gene fragment “BGLBkai-N” was ligated using TaKaRa DNA Ligation Kit Mighty Mix (manufactured by TAKARA SHUZO CO., LTD.). Thus, a plasmid “BGLBkai-pCB1” was prepared. The reaction conditions such as enzyme followed the conditions in the protocol attached to the kit. The plasmid “BGLBkai-pCB1” was constructed in such a manner as to express the modified acBGLB using the start codon of its own in the host Trichoderma viride.

(3) Preparation of Trichoderma viride Transformant with Plasmid “BGLBkai-pCB1”

Trichoderma viride was transformed with the plasmid “BGLBkai-pCB1” obtained in Example 4-(2) in accordance with the method described in International Publication No. WO2005/056787. The transformation was carried out by a co-transformation method using Trichoderma viride strain 2 deficient in a gene for uracil biosynthesis (pyr4) as a host and a pyr4 gene of Neurospora crassa as a selection marker. The Trichoderma viride strain 2 was cultured in 50 mL of a fungal cell-forming medium (1% yeast extract, 1% malt extract, 2% polypeptone, 2.5% glucose, 0.1% dipotassium hydrogen phosphate, 0.05% magnesium sulfate heptahydrate, 0.0001% uridine (pH7.0)) at 28° C. for 24 hours, and centrifuged at 3000 rpm for 10 minutes, and the fungal cells were collected. The obtained fungal cells were washed with 0.5 mol/L of sucrose, and suspended in a protoplast-forming enzyme solution (1 mg/mL of β-glucuronidase, 0.3 mg/mL of chitinase, 0.3 mg/mL of zymolyase, 0.5 mol/L of sucrose) that had been filtered through cotton. The mixture was shaken at 30° C. for 60 minutes, so that the hypha was formed into a protoplast. This suspension was filtered, and then centrifuged at 2500 rpm for 10 minutes to collect the protoplast, which was washed with a SUTC buffer (0.5 mol/L of sucrose, 10 mmol/L of calcium chloride, 10 mmol/L of Tris-HCl (pH 7.5)).

The protoplast was suspended in 100 μL of a SUTC buffer, to which 10 μg of a DNA solution 10 μL containing the plasmid “BGLBkai-pCB1” and 10 μL of a DNA solution containing the pyr4 gene were added. The resultant was allowed to stand in ice for 5 minutes. Next, 400 μl of a PEG solution (60% of PEG4000, 10 mmol/L of calcium chloride, 10 mmol/L of Tris-HCl (pH 7.5)) was added thereto, which was allowed to stand in ice for 20 minutes. Then, 10 mL of a SUTC buffer was added thereto, which was centrifuged at 2500 rpm for 10 minutes. The protoplast thus collected was suspended in 1 mL of a SUTC buffer, and each 200-μl solution of the protoplast suspension was overlaid with soft agar on a minimum medium containing 0.5 mol/L of sucrose, followed by culturing at 28° C. for 5 days. Subsequently, grown colonies were again transferred on a minimum medium. The colonies formed thereon were used as transformants.

(4) Culturing and Identification of “BGLBkai-pCB1” Transformant

The plasmid “BGLBkai-pCB1” was introduced into each of the minimum media. A line grown on the medium was selected, and cultured in accordance with WO 98/11239 A. The resultant culture supernatant fluid was separated by electrophoresis using 12% Gel SDS-PAGE mini (manufactured by TEFCO). A culture supernatant having a favorably detectable band which migrated the same distance as that of the acBGLB identified in Example 2 was selected.

(5) Identification of Partial Amino Acid Sequence of Recombinant Modified acBGLB

To confirm that the protein expressed in a large amount in Example 4-(4) was the modified acBGLB, the partial amino acid sequence was determined. First, the protein in the culture supernatant was separated by electrophoresis using 12% Gel SDS-PAGE mini (manufactured by TEFCO). A band corresponding to the acBGLB separated according to the method in Example 2 was treated with lysyl endopeptidase. The degraded product was separated by electrophoresis using 12% Gel SDS-PAGE mini (manufactured by TEFCO), and blotted on a PVDF membrane (manufactured by Millipore Corporation). A band of the peptide fragment thus obtained was cut out. The N-terminal amino acid sequence of the peptide fragment was determined using a protein sequencer Model 492 (manufactured by Applied Biosystems Inc.). As a result, the N-terminal amino acid sequence corresponded to the partial amino acid sequence (SEQ ID NO: 6) of the acBGLB.

Example 5 Measurement of Enzyme Activity of Trichoderma viride Transformant

The β-glucosidase activity was measured using the culture supernatant of the “BGLBkai-pCB1” transformant obtained in Example 4-(4). The measurement method followed the method described in the literature (Methods in ENZYMOLOGY, vol. 160, Biomass Part A Cellulose and Hemicellulose, Willis A. Wood ed. p 109-110). Note that the β-glucosidase activity is defined as an activity of producing 1 μmol of p-nitrophenol from p-nitrophenyl-β-glucoside in 1 minute, and was represented as activity (U/mL) per mL of the culture supernatant. The result is as shown in Table 1. As apparent from Table 1, the transformant showed the activity approximately 7.5 times as high as a parental strain (original Trichoderma viride strain not deficient in a gene for uracil biosynthesis).

TABLE 1 (β-glucosidase activity (U/mL) Parental strain  211 Transformant 1592

This revealed that a cellulase-producing microorganism having a low β-glucosidase activity over-expressed a β-glucosidase derived from Acremonium cellulolyticus, and that it was thus made possible to enhance the β-glucosidase activity of the microorganism.

INDUSTRIAL APPLICABILITY

As described above, the present invention makes it possible to obtain a β-glucosidase derived from Acremonium cellulolyticus as a purified protein or a cellulase preparation in high yield. By using the β-glucosidase or the cellulase preparation thus obtained, saccharification from biomass to glucose can be promoted, and treatments and modifications on a cellulose-based substrate can be carried out efficiently. Moreover, these β-glucosidase and cellulase preparation can be utilized at reduced cost. Further, by utilizing a filamentous fungus expressing a reduced amount of the β-glucosidase of the present invention, cellobiose useful as a sweetener, a cosmetic raw material, or a drug raw material can be produced efficiently. 

1-21. (canceled)
 22. A protein encoded by a polynucleotide comprising: (A) a cDNA of any one of the following (i) to (v), which encodes a protein having a β-glucosidase activity: (i) a cDNA encoding a protein comprising the amino acid sequence of SEQ ID NO: 3; (ii) a cDNA comprising the nucleotide sequence of SEQ ID NO: 1; (iii) a cDNA encoding a protein comprising the amino acid sequence of SEQ ID NO: 3 in which 1 to 20 amino acids are substituted, deleted, inserted and/or added; (iv) a cDNA encoding a protein comprising an amino acid sequence having an identity of 98% or more with the amino acid sequence of SEQ ID NO: 3; and (v) a cDNA of any one of (i) to (iv) from which a sequence encoding a signal sequence is removed; (B) a polynucleotide of any one of the following (i) and (ii), which encodes a protein having a β-glucosidase activity: (i) a polynucleotide comprising the nucleotide sequence of SEQ ID NO: 4, and (ii) a polynucleotide comprising the nucleotide sequence of SEQ ID NO: 4 from which a sequence encoding a signal sequence is removed; or (C) a polynucleotide comprising the nucleotide sequence of SEQ ID NO: 4 in which 30 nucleotides or less are substituted, deleted, inserted and/or added, the polynucleotide encoding a protein having a β-glucosidase activity and being expressible in Trichoderma viride.
 23. The protein according to claim 22, which is a recombinant protein.
 24. A cellulase preparation comprising the protein according to claim
 23. 25. A method for degrading or converting a cellulose material, the method comprising the step of: treating the cellulose material with any one of the proteins according to claim 22 and a cellulase preparation comprising a protein encoded by a polynucleotide of any one of the following (A) to (C): (A) A polynucleotide of any one of the following (i) to (v), which encodes a protein having a β-glucosidase activity: (i) a polynucleotide encoding a protein comprising an amino acid sequence of SEQ ID NO: 3; (ii) a polynucleotide comprising the nucleotide sequence of any one of SEQ ID NO: 1 or the nucleotide sequence consisting of nucleotides 218 to 733, 793 to 1664, 1718 to 2522, and 2602 to 2847 of SEQ ID NO: 2; (iii) a polynucleotide encoding a protein comprising an amino acid sequence of SEQ ID NO: 3 in which 1 to 20 amino acids are substituted, deleted, inserted and/or added; (iv) a polynucleotide encoding a protein comprising an amino acid sequence having an identity of 98% or more with the amino acid sequence of SEQ ID NO: 3; and (v) a polynucleotide of any one of (i) to (iv) from which a base sequence encoding a signal sequence is removed: (B) A polynucleotide of any one of the following (i) and (ii), which encodes a protein having a β-glucosidase activity: (i) a polynucleotide encoding a protein comprising an amino acid sequence of SEQ ID NO: 5; and (ii) a polynucleotide comprising a coding region of a base sequence of SEQ ID NO: 4, and (C) A polynucleotide comprising a base sequence of SEQ ID NO: 4 in which 30 bases or less are substituted, deleted, inserted and/or added, the polynucleotide encoding a protein having a β-glucosidase activity and being expressible in Trichoderma viride.
 26. A method for producing a degraded or converted cellulose material, the method comprising the steps of: treating a cellulose material with any one of the protein according to claim 22 and the cellulase preparation according to claim 24; and collecting a degraded cellulose material.
 27. The method according to claim 26, wherein the degraded cellulose material is a sugar.
 28. A detergent composition comprising any one of the proteins according to claim 22 and a cellulase preparation comprising a protein encoded by a polynucleotide of any one of the following (A) to (C): (A) A polynucleotide of any one of the following (i) to (v), which encodes a protein having a β-glucosidase activity: (i) a polynucleotide encoding a protein comprising an amino acid sequence of SEQ ID NO: 3; (ii) a polynucleotide comprising the nucleotide sequence of any one of SEQ ID NO: 1 or the nucleotide sequence consisting of nucleotides 218 to 733, 793 to 1664, 1718 to 2522, and 2602 to 2847 of SEQ ID NO: 2; (iii) a polynucleotide encoding a protein comprising an amino acid sequence of SEQ ID NO: 3 in which 1 to 20 amino acids are substituted, deleted, inserted and/or added; (iv) a polynucleotide encoding a protein comprising an amino acid sequence having an identity of 98% or more with the amino acid sequence of SEQ ID NO: 3; and (v) a polynucleotide of any one of (i) to (iv) from which a base sequence encoding a signal sequence is removed: (B) A polynucleotide of any one of the following (i) and (ii), which encodes a protein having a β-glucosidase activity: (i) a polynucleotide comprising the nucleotide sequence of SEQ ID NO: 4; and (ii) a polynucleotide comprising the nucleotide sequence of SEQ ID NO: 4 from which a sequence encoding a signal sequence is removed, and (C) A polynucleotide comprising a base sequence of SEQ ID NO: 4 in which 30 nucleotides or less are substituted, deleted, inserted and/or added, the polynucleotide encoding a protein having a β-glucosidase activity and being expressible in Trichoderma viride.
 29. A method for treating a cellulose-containing fiber, the method comprising the step of: bringing any one of the proteins according to claim 22, a cellulase preparation comprising a protein encoded by a polynucleotide of any one of the following (A) to (C): (A) A polynucleotide of any one of the following (i) to (v), which encodes a protein having a β-glucosidase activity: (i) a polynucleotide encoding a protein comprising an amino acid sequence of SEQ ID NO: 3; (ii) a polynucleotide comprising the nucleotide sequence of any one of SEQ ID NO: 1 or the nucleotide sequence consisting of nucleotides 218 to 733, 793 to 1664, 1718 to 2522, and 2602 to 2847 of SEQ ID NO: 2; (iii) a polynucleotide encoding a protein comprising an amino acid sequence of SEQ ID NO: 3 in which 1 to 20 amino acids are substituted, deleted, inserted and/or added; (iv) a polynucleotide encoding a protein comprising an amino acid sequence having an identity of 98% or more with the amino acid sequence of SEQ ID NO: 3; and (v) a polynucleotide of any one of (i) to (iv) from which a base sequence encoding a signal sequence is removed: (B) A polynucleotide of any one of the following (i) and (ii), which encodes a protein having a β-glucosidase activity: (i) a polynucleotide comprising the nucleotide sequence of SEQ ID NO: 4; and (ii) a polynucleotide comprising the nucleotide sequence of SEQ ID NO: 4 from which a sequence encoding a signal sequence is removed, and (C) A polynucleotide comprising a nucleotide sequence of SEQ ID NO: 4 in which 30 nucleotides or less are substituted, deleted, inserted and/or added, the polynucleotide encoding a protein having a β-glucosidase activity and being expressible in Trichoderma viride, and a detergent composition comprising any one of the proteins according to claim 22 and a cellulase preparation comprising a protein encoded by a polynucleotide of any one of the following (A) to (C): (A) A polynucleotide of any one of the following (i) to (v), which encodes a protein having a β-glucosidase activity: (i) a polynucleotide encoding a protein comprising an amino acid sequence of SEQ ID NO: 3; (ii) a polynucleotide comprising the nucleotide sequence of any one of SEQ ID NO: 1 or the nucleotide sequence consisting of nucleotides 218 to 733, 793 to 1664, 1718 to 2522, and 2602 to 2847 of SEQ ID NO: 2; (iii) a polynucleotide encoding a protein comprising an amino acid sequence of SEQ ID NO: 3 in which 1 to 20 amino acids are substituted, deleted, inserted and/or added; (iv) a polynucleotide encoding a protein comprising an amino acid sequence having an identity of 98% or more with the amino acid sequence of SEQ ID NO: 3; and (v) a polynucleotide of any one of (i) to (iv) from which a base sequence encoding a signal sequence is removed: (B) (B) A polynucleotide of any one of the following (i) and (ii), which encodes a protein having a β-glucosidase activity: (i) a polynucleotide comprising the nucleotide sequence of SEQ ID NO: 4; and (ii) a polynucleotide comprising the nucleotide sequence of SEQ ID NO: 4 from which a sequence encoding a signal sequence is removed, and (C) A polynucleotide comprising a nucleotide sequence of SEQ ID NO: 4 in which 30 nucleotides or less are substituted, deleted, inserted and/or added, the polynucleotide encoding a protein having a β-glucosidase activity and being expressible in Trichoderma viride, into contact with the cellulose-containing fiber.
 30. A method for deinking waste paper, the method characterized in that any one of the protein according to claim 22 and a cellulase preparation comprising a protein encoded by a polynucleotide of any one of the following (A) to (C): (A) A polynucleotide of any one of the following (i) to (v), which encodes a protein having a β-glucosidase activity: (i) a polynucleotide encoding a protein comprising an amino acid sequence of SEQ ID NO: 3; (ii) a polynucleotide comprising the nucleotide sequence of any one of SEQ ID NO: 1 or the nucleotide sequence consisting of nucleotides 218 to 733, 793 to 1664, 1718 to 2522, and 2602 to 2847 of SEQ ID NO: 2; (iii) a polynucleotide encoding a protein comprising an amino acid sequence of SEQ ID NO: 3 in which 1 to 20 amino acids are substituted, deleted, inserted and/or added; (iv) a polynucleotide encoding a protein comprising an amino acid sequence having an identity of 98% or more with the amino acid sequence of SEQ ID NO: 3; and (v) a polynucleotide of any one of (i) to (iv) from which a base sequence encoding a signal sequence is removed: (B) A polynucleotide of any one of the following (i) and (ii), which encodes a protein having a β-glucosidase activity: (i) a polynucleotide comprising the nucleotide sequence of SEQ ID NO: 4; and (ii) a polynucleotide comprising the nucleotide sequence of SEQ ID NO: 4 from which a sequence encoding a signal sequence is removed, and (C) A polynucleotide comprising a nucleotide sequence of SEQ ID NO: 4 in which 30 nucleotides or less are substituted, deleted, inserted and/or added, the polynucleotide encoding a protein having a β-glucosidase activity and being expressible in Trichoderma viride. is used in a deinking step of treating the waste paper with a deinking agent.
 31. A method for producing paper pulp having an improved drainage, the method comprising the step of: treating paper pulp with any one of the protein according to claim 22 and a cellulase preparation comprising a protein encoded by a polynucleotide of any one of the following (A) to (C): (A) A polynucleotide of any one of the following (i) to (v), which encodes a protein having a β-glucosidase activity: (i) a polynucleotide encoding a protein comprising an amino acid sequence of SEQ ID NO: 3; (ii) a polynucleotide comprising the nucleotide sequence of any one of SEQ ID NO: 1 or the nucleotide sequence consisting of nucleotides 218 to 733, 793 to 1664, 1718 to 2522, and 2602 to 2847 of SEQ ID NO: 2; (iii) a polynucleotide encoding a protein comprising an amino acid sequence of SEQ ID NO: 3 in which 1 to 20 amino acids are substituted, deleted, inserted and/or added; (iv) a polynucleotide encoding a protein comprising an amino acid sequence having an identity of 98% or more with the amino acid sequence of SEQ ID NO: 3; and (v) a polynucleotide of any one of (i) to (iv) from which a base sequence encoding a signal sequence is removed: (B) A polynucleotide of any one of the following (i) and (ii), which encodes a protein having a β-glucosidase activity: (i) a polynucleotide comprising the nucleotide sequence of SEQ ID NO: 4; and (ii) a polynucleotide comprising the nucleotide sequence of SEQ ID NO: 4 from which a sequence encoding a signal sequence is removed, and (C) A polynucleotide comprising a nucleotide sequence of SEQ ID NO: 4 in which 30 nucleotides or less are substituted, deleted, inserted and/or added, the polynucleotide encoding a protein having a β-glucosidase activity and being expressible in Trichoderma viride.
 32. A method for producing an animal feed having an improved digestibility, the method comprising the step of: treating an animal feed with any one of the protein according to claim 22 and a cellulase preparation comprising a protein encoded by a polynucleotide of any one of the following (A) to (C): (A) A polynucleotide of any one of the following (i) to (v), which encodes a protein having a β-glucosidase activity: (i) a polynucleotide encoding a protein comprising an amino acid sequence of SEQ ID NO: 3; (ii) a polynucleotide comprising the nucleotide sequence of any one of SEQ ID NO: 1 or the nucleotide sequence consisting of nucleotides 218 to 733, 793 to 1664, 1718 to 2522, and 2602 to 2847 of SEQ ID NO: 2; (iii) a polynucleotide encoding a protein comprising an amino acid sequence of SEQ ID NO: 3 in which 1 to 20 amino acids are substituted, deleted, inserted and/or added; (iv) a polynucleotide encoding a protein comprising an amino acid sequence having an identity of 98% or more with the amino acid sequence of SEQ ID NO: 3; and (v) a polynucleotide of any one of (i) to (iv) from which a base sequence encoding a signal sequence is removed: (B) A polynucleotide of any one of the following (i) and (ii), which encodes a protein having a β-glucosidase activity: (i) a polynucleotide comprising the nucleotide sequence of SEQ ID NO: 4; and (ii) a polynucleotide comprising the nucleotide sequence of SEQ ID NO: 4 from which a sequence encoding a signal sequence is removed, and (C) A polynucleotide comprising a nucleotide sequence of SEQ ID NO: 4 in which 30 nucleotides or less are substituted, deleted, inserted and/or added, the polynucleotide encoding a protein having a β-glucosidase activity and being expressible in Trichoderma viride.
 33. A filamentous fungus expressing a reduced amount of a protein encoded by a cDNA of any one of the following (i) to (v), which encodes a protein having a β-glucosidase activity: (i) a cDNA encoding a protein comprising the amino acid sequence of SEQ ID NO: 3; (ii) a cDNA comprising the nucleotide sequence of SEQ ID NO: 1; (iii) a cDNA encoding a protein comprising the amino acid sequence of SEQ ID NO: 3 in which 1 to 20 amino acids are substituted, deleted, inserted and/or added; (iv) a cDNA encoding a protein comprising an amino acid sequence having an identity of 98% or more with the amino acid sequence of SEQ ID NO: 3; and (v) a cDNA of any one of (i) to (iv) from which a sequence encoding a signal sequence is removed, which is derived from a filamentous fungus. 